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Jonathan Ting

Investigator, Associate

teams /
Allenite

Jonathan serves as an associate investigator and member of the scientific leadership team where he guides strategy on platform technologies and applications to disease focus areas in the Precision Medicine Program. He is a close collaborator and strategic advisor to the Electrophysiology and Modeling team and co-leads efforts spanning these two pillars. Jonathan additionally holds affiliate appointments as Scientist in the WA National Biomedical Research Center and Associate Professor in the Department of Neurobiology and Biophysics at the University of Washington, Seattle.

Jonathan originally joined the Allen Institute  in 2013. He led the early development, proof of concept and scaling of human and non-human primate ex vivo brain slice single neuron recording pipelines, as well as the viral genetic tools pipeline. As a former project lead and stakeholder, he contributed to key Allen Institute open access resources including the Allen Cell Types Database and Genetic Tools Atlas. The novel brain cell type targeting viral tools created through these Institute efforts have been used by Jonathan and team to characterize the signature properties of diverse brain cell types in basic research and preclinical applications and shared broadly with the research community through Addgene.  

Prior to joining the Allen Institute Jonathan earned a BS in Biological Sciences from the University of California, Davis and a PhD in Neurobiology & Behavior from the University of Washington, Seattle. In his postdoctoral fellowships at Duke University and the McGovern Institute for Brain Research at MIT, Jonathan studied the neural circuitry basis of psychiatric disorders including autism spectrum disorders (ASDs) and OCD in genetic mouse models and pioneered improved methods for brain tissue preservation and adult and aging animal patch-clamp recording that were later adopted by the Allen Institute for large-scale single neuron recording pipelines applied to mouse, macaque, and human ex vivo brain tissue.

research focus

A comprehensive analysis of the architecture and function of the human brain requires a multifaceted strategy for revealing the true complexity and diversity of cell types that reside within. It is the exquisite and complex assembly of these unique cell types into distinct functional circuits that enables us to perform essential tasks such as sensory perception, coordinated movement, cognition, and more. Although much effort has been devoted to anatomical mapping of the human brain using post-mortem tissue in both health and disease, the detailed analysis of functions subserved by individual cells within the living human brain has been more challenging to explore. To achieve this goal, we have established extensive research collaborations with local neurosurgeons in the greater-Seattle area to routinely obtain neurosurgical samples of human cortex for research purposes. The vital human brain tissue is transported to the Allen Institute and sectioned into brain slices for detailed analysis using diverse methodologies including patch clamp electrophysiology, optical imaging, single cell transcriptomic profiling, morphological reconstructions, and array tomography. We hope this effort will culminate in a comprehensive classification of cell types of the human neocortex.

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featured publications

publication / 2024
Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues
eLife
publication / 2024
Morpho-electric diversity of human hippocampal CA1 pyramidal neurons
Cell Reports
publication / 2024
Author Correction: Conserved and divergent gene regulatory programs of the mammalian neocortex
Nature
publication / 2023
Conserved and divergent gene regulatory programs of the mammalian neocortex
Nature
publication / 2022
Multi-modal characterization and simulation of human epileptic circuitry
Cell Reports
publication / 2021
A multimodal cell census and atlas of the mammalian primary motor cortex
Nature
publication / 2021
Enhancer viruses for combinatorial cell-subclass-specific labeling
Neuron
publication / 2019
Classification of electrophysiological and morphological neuron types in the mouse visual cortex
Nature Neuroscience
publication / 2017
SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology
Scientific Reports
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